Knowledge graphs [1–4] represent structured knowledge using nodes and edges, where nodes signify entities and edges denote relationships between these entities. These graphs have become essential in various fields such as cultural heritage [5], life sciences [6], and encyclopedic knowledge bases, thanks to projects like Yago [7], DBpedia [8], and Wikidata [9]. These knowledge graphs have enabled significant advancements in data integration and semantic understanding, leading to more informed scientific hypotheses and enhanced data exploration.

Despite their importance, understanding the topology and dynamics of knowledge graphs remains a challenge due to their complex and often chaotic nature. Current models, like the preferential attachment mechanism, are limited to simpler networks and fail to capture the intricate interplay of diverse relationships in knowledge graphs. There is a pressing need for models that can accurately represent the structure and dynamics of knowledge graphs, allowing for better understanding, prediction, and utilisation of the knowledge contained within them.

The paper by Lhote, Markhoff, and Soulet [10] introduces a novel approach to modelling the structure and dynamics of knowledge graphs through the concept of superficiality. This model aims to control the overlap between relationships, providing a mechanism to balance the distribution of knowledge and reduce the proportion of misdescribed entities. This is the first model tailored specifically to knowledge graphs, addressing the unique challenges posed by their complexity and diverse relationship types. The innovation lies in the introduction of superficiality, a parameter that governs the probability of adding new entities versus enriching existing ones within the graph. This model not only addresses the multimodal probability distributions observed in real KGs but also offers a more granular understanding of the knowledge distribution, particularly the presence of misdescribed entities. The authors validated their model against three major knowledge graphs: BnF, ChEMBL, and Wikidata. The results demonstrated that the generative model accurately reproduces the observed distributions of incoming and outgoing degrees in these knowledge graphs. The model successfully captures the multimodal nature and the irregularities in the degree distributions, especially for entities with low connectivity, which are typically the majority in a knowledge graphs.

One significant finding is the impact of superficiality on the level of misdescribed entities. The study revealed that lower superficiality leads to a more uniform distribution of relationships across entities, thus reducing the number of entities described by few relationships. Conversely, higher superficiality results in a higher proportion of entities with minimal descriptive facts, reflecting a paradox where increasing the volume of knowledge does not necessarily reduce the level of ignorance. The authors also conducted an ablation study comparing their model to traditional models like Barabási-Albert [11] and Bollobás [12]. The results showed that the proposed multiplex model with superficiality parameters consistently outperformed these traditional models in accurately reflecting the characteristics of real-world knowledge graphs. 

This research provides a groundbreaking approach to understanding and modelling the structure and dynamics of knowledge graphs. By introducing superficiality, the authors offer a new lens through which to examine the distribution and organisation of knowledge within these complex structures. The model not only enhances our theoretical understanding of knowledge graphs but also has practical implications for improving data storage, query optimisation, and the robustness of knowledge induction processes.

The introduction of superficiality opens several avenues for future research and application. One potential direction is refining the model to account for localised perturbations in smaller knowledge graphs or specific domains within larger knowledge graphs. Additionally, longitudinal studies could further elucidate the evolution of superficiality over time and its impact on the quality of knowledge representation. Another promising area is the application of this model in real-time knowledge graphs management systems. By adjusting superficiality parameters dynamically, it may be possible to optimise the balance between entity enrichment and the introduction of new entities, leading to more robust and accurate knowledge graphs. In the broader context of knowledge engineering and data science, this model offers a framework for exploring the vulnerability of knowledge graphs and their susceptibility to various types of biases and inaccuracies. This understanding could lead to the development of more resilient knowledge systems capable of adapting to new information while maintaining a high level of accuracy and coherence.

Overall, the concept of superficiality and the associated generative model represent significant advancements in the study and application of knowledge graphs, promising to enhance both our theoretical understanding and practical capabilities in managing and utilising these complex data structures. It would be interesting to see how this can be extended to domains in social network analyses [13,14].

References

​1.     Nickel M, Murphy K, Tresp V, Gabrilovich E. 2015 A review of relational machine learning for knowledge graphs. Proceedings of the IEEE 104, 11-33. https://doi.org/10.1109/JPROC.2015.2483592

2.     Ehrlinger L, Wöß W. 2016 Towards a definition of knowledge graphs. SEMANTiCS (Posters, Demos, SuCCESS) 48, 2.

3.     Hogan A et al. 2021 Knowledge graphs. ACM Computing Surveys (Csur) 54, 1-37.

4.     Ji S, Pan S, Cambria E, Marttinen P, Philip SY. 2021 A survey on knowledge graphs: Representation, acquisition, and applications. IEEE transactions on neural networks and learning systems 33, 494-514. https://doi.org/10.1109/TNNLS.2021.3070843

5.     Bikakis A, Hyvönen E, Jean S, Markhoff B, Mosca A. 2021 Special issue on semantic web for cultural heritage. Semantic Web 12, 163-167. https://doi.org/10.3233/SW-210425

6.     Santos A et al. 2022 A knowledge graph to interpret clinical proteomics data. Nature biotechnology 40, 692-702. https://doi.org/10.1038/s41587-021-01145-6

7.     Suchanek FM, Kasneci G, Weikum G. 2007 Yago: a core of semantic knowledge. pp. 697-706. https://doi.org/10.1145/1242572.1242667

8.     Auer S, Bizer C, Kobilarov G, Lehmann J, Cyganiak R, Ives Z. 2007 Dbpedia: A nucleus for a web of open data. pp. 722-735. Springer. https://doi.org/10.1007/978-3-540-76298-0_52

9.     Mora-Cantallops M, Sánchez-Alonso S, García-Barriocanal E. 2019 A systematic literature review on Wikidata. Data Technologies and Applications 53, 250-268. https://doi.org/10.1108/DTA-12-2018-0110

10.  Lhote L, Markhoff B, Soulet A. 2023 The Structure and Dynamics of Knowledge Graphs, with Superficiality. arXiv, ver. 3 peer-reviewed and recommended by Peer Community in Network Science. https://doi.org/10.48550/arXiv.2305.08116

11.  Barabási A-L, Albert R. 1999 Emergence of scaling in random networks. science 286, 509-512. https://doi.org/10.1126/science.286.5439.509

12.  Bollobás B, Borgs C, Chayes JT, Riordan O. 2003 Directed scale-free graphs. pp. 132-139. Baltimore, MD, United States.

13.  Sueur C, King AJ, Pelé M, Petit O. 2013 Fast and accurate decisions as a result of scale-free network properties in two primate species. In Proceedings of the European conference on complex systems 2012 (eds T Gilbert, M Kirkilionis, G Nicolis), pp. 579-584. https://doi.org/10.1007/978-3-319-00395-5_71

14.  Romano V, Shen M, Pansanel J, MacIntosh AJJ, Sueur C. 2018 Social transmission in networks: global efficiency peaks with intermediate levels of modularity. Behav Ecol Sociobiol 72, 154. https://doi.org/10.1007/s00265-018-2564-9

Sueur et al. (2024) investigate the influence of an individual’s social network structure on various aspects of healthy ageing, including depressive symptoms, life satisfaction, and overall well-being. The primary dataset comprises 73 adults aged 60 and above, residing in the Paris region from 2019 to 2020, who completed a VERITAS socioeconomic/demographic questionnaire; and is augmented with official data on the characteristics of residential neighbourhoods. The authors apply principal component analysis (PCA) to network structure metrics including degree centrality, density, and global clustering, and identify four dimensions that they argue have social significance: homophily, social integration, social support, and perceived accessibility to local services. Unexpectedly, the authors’ statistical analysis reveals that none of the PCA dimensions are linked to healthy ageing.

Although network-based PCA dimensions have been used as explanatory variables in other settings, this paper may be the first to apply the technique to healthy ageing. The main result stands in contrast to related literature which indicates that positive social relationships (engagement, sense of community) are related to more favourable mortality and disease outcomes and that these effects persist as people become older. The paper is a useful contribution to an issue that has considerable public health policy importance. It will motivate further research to understand the negative main result, including potential information loss from PCA, issues of small sample bias and identification (relatively few of the respondents were depressed or anxious), specificity of the survey to the Paris region, and more advanced econometric modelling to better understand causal relationships (rather than correlations) between social networks and well-being in older people.

Reference

C. Sueur, G. Fancello, A. Naud, Y. Kestens, and B. Chaix (2024) The complexity of social
networks in healthy aging: novel metrics and their associations with psychological wellbeing. OSF Preprints, ver. 3 peer-reviewed and recommended by Peer Community in Network Science.
https://doi.org/10.31219/osf.io/j9uz8

Social relationships are recognized as an important age-related mediator of health in humans and fitness-related traits in animals (Sueur et al., 2021). Vandeleest et al. (2024) is a pioneering exploration into the complex interplay between social relationships and health in rhesus macaques. It breaks new ground by differentiating between two types of affiliative relationships – multiplex (engaging in multiple types of affiliative behaviors like grooming and contact sitting) and uniplex (involving only one type of behavior, such as grooming) (Beisner et al., 2020). The study's crux lies in its novel approach to understanding how these differing social interactions correlate with biomarkers of inflammation, namely pro-inflammatory cytokines like IL-6 and TNF-alpha.

The research is innovative in its use of social network analysis (Sosa et al., 2021), allowing for a nuanced view of the rhesus macaques' social dynamics. It reveals that multiplex grooming networks, characterized by more modular structures and kin bias, are associated with lower inflammation levels. This is in contrast to uniplex grooming networks, where a stronger link to social status correlates with higher inflammation. These findings suggest that multiplex relationships could serve as supportive, health-promoting bonds, while uniplex relationships might be more transactional, with possible physiological costs.

Moreover, the study's results highlight the importance of the diversity of affiliative interactions within a dyad. It posits that relationships involving multiple types of affiliative behaviors may have different implications for health and well-being compared to those based on a single behavior type, even if interaction rates are similar. This insight opens up new avenues for understanding the health implications of social behaviors in non-human primates and potentially in humans (Sueur et al., 2021).

Furthermore, the paper provides a comprehensive analysis of the network structures, examining kin bias, clustering, modularity, and associations with dominance rank. It also evaluates the correlations between individual network positions and health markers, offering a multifaceted understanding of how social networks influence physical well-being.

In essence, this research makes a significant contribution to our understanding of the link between sociality and health. It underscores the complexity of social relationships (Moscovice et al., 2020) and their varied impacts on health, suggesting that the nature of social bonds (multiplex vs. uniplex) plays a critical role in determining their health consequences. This study not only enhances our comprehension of primate social behavior but also has broader implications for the fields of social neuroscience, behavioral ecology, and health psychology.

References

Beisner, B., Braun, N., Pósfai, M., Vandeleest, J., D’Souza, R., & McCowan, B. (2020). A multiplex centrality metric for complex social networks: Sex, social status, and family structure predict multiplex centrality in rhesus macaques. PeerJ, 8, e8712. https://doi.org/10.7717/peerj.8712

Moscovice, L. R., Sueur, C., & Aureli, F. (2020). How socio-ecological factors influence the differentiation of social relationships: An integrated conceptual framework. Biology Letters, 16(9), 20200384. https://doi.org/10.1098/rsbl.2020.0384

Sosa, S., Sueur, C., & Puga-Gonzalez, I. (2021). Network measures in animal social network analysis: Their strengths, limits, interpretations and uses. Methods in Ecology and Evolution, 12(1), 10–21. https://doi.org/10.1111/2041-210X.13366

Sueur, C., Quque, M., Naud, A., Bergouignan, A., & Criscuolo, F. (2021). Social capital: An independent dimension of healthy ageing. Peer Community Journal, 1. https://doi.org/10.24072/pcjournal.33

Vandeleest, J. J., Wooddell, L. J., Nathman, A. C., Beisner, B. A., & McCowan, B. (2024). Differential effects of multiplex and uniplex affiliative relationships on biomarkers of inflammation. bioRxiv, ver. 4 peer-reviewed and recommended by Peer Community in Network Science. https://doi.org/10.1101/2022.11.01.514247

Networks provide an ideal tool to link social behaviour and infection in animal societies (White et al. 2017). A major focus of previous research has been on the links between social centrality and infection (Briard & Ezenwa 2021). But what happens when conclusions are drawn from sampled networks in which some individuals are not observed, or when studies focus on some individuals at the expense of others (e.g. adults versus juveniles or females versus males)? Xu et al. (2022) examine how focusing on different samples of individuals in a network analysis relating centrality to parasite load in Japanese macaques Macaca fuscata influence the conclusions drawn.

Xu et al. (2022) use faecal egg counts to estimate parasite loads of three environmentally transmitted parasites Oesophagostomum aculeatum, Strongyloides fuelleborni and Trichuris trichiura in a group of macaques on Koshima Island, Japan. After showing positive associations between parasite load and strength (the sum of an individual’s connections) and eigenvector centrality (accounting for second-order connections) in a 1-metre proximity network, the authors explore how this result is impacted by focusing on only adult females, only juveniles or random sub-samples of the population. Their results indicate that the positive association persists more strongly in the adult female networks albeit with reduced statistical power to detect it. It is largely absent in juveniles (either based on their centrality in the full network or centrality in the juvenile-only network). Random removal of individuals from the network led to a rapid reduction in the ability to detect the same positive association between centrality and parasite load due to a combination of changes in individual centrality in re-sampled networks and reduced statistical power. 

The timescale of network data collection and proximity networks studied are (likely) not fully relevant for the transmission of these parasites and social transmission of the parasites studied here is likely to be limited, there remain other reasons that we may expect correlations between sociality and infection (Ezenwa et al. 2016). Nevertheless, this is a useful contribution to the literature on sampling effects in animal networks, complementing existing work (Franks et al. 2010, Silk et al. 2015, Davis et al. 2018, Silk 2018). The results from considering different sub-samples of the group show the potential importance of carefully considering whether social network effects will be equivalently important for the whole population and which interactions will contribute either to promoting health or increasing the risk of infection. The results of random sub-sampling show how in small (within-group) networks such as these even small numbers of missing individuals could have substantial impacts on testing how traits are associated with the social network position of individuals.

The findings set up some interesting questions about how best to develop effective sampling designs in single-group studies such as these, or in how best to extend these types of projects across multiple groups (see also Silk 2018). Testing the generality of these findings across taxa with different social systems and infection prevalences or loads will also be a valuable next step for behavioural disease ecology.

References

Briard L, Ezenwa VO. 2021. Parasitism and host social behaviour: a meta-analysis of insights derived from social network analysis. Anim. Behav. 172, 171-182. https://doi.org/10.1016/j.anbehav.2020.11.010

Davis GH, Crofoot MC, Farine DR. 2018. Estimating the robustness and uncertainty of animal social networks using different observational methods. Anim. Behav. 141, 29-44. https://doi.org/10.1016/j.anbehav.2018.04.012

Ezenwa VO, Ghai RR, McKay AF, Williams AE. 2016. Group living and pathogen infection revisited. Curr. Opin. Behav. Sci. 12, 66-72. https://doi.org/10.1016/j.cobeha.2016.09.006 

Franks DW, Ruxton GD, James R. 2010. Sampling animal association networks with the gambit of the group. Behav. Ecol. Sociobiol. 64, 493-503. https://doi.org/10.1007/s00265-009-0865-8

Silk MJ, Jackson AL, Croft DP, Colhoun K, Bearhop S. 2015. The consequences of unidentifiable individuals for the analysis of an animal social network. Anim. Behav. 104, 1-11. https://doi.org/10.1016/j.anbehav.2015.03.005

Silk MJ. 2018. The next steps in the study of missing individuals in networks: a comment on Smith et al. (2017). Soc. Net. 52, 37-41. https://doi.org/10.1016/j.socnet.2017.05.002

White LA, Forester JD, Craft ME. 2017. Using contact networks to explore mechanisms of parasite transmission in wildlife. Biol. Rev. 92, 389-409. https://doi.org/10.1111/brv.12236

Xu Z, MacIntosh AJJ, Castellano-Navarro A, Macanás-Martinez E, Suzumura T, Dubosq J. 2022. Linking parasitism to network centrality and the impact of sampling bias in its interpretation. bioRxiv 2021.06.07.447302, ver. 6 peer-reviewed and recommended by Peer Community in Network Science. https://doi.org/10.1101/2021.06.07.447302 

What is the relationship between social capital and healthy ageing? This is the simple yet ambitious question that Sueur et al. (2021) tackle in their review. The relationship between social capital (understood as the resources an individual has access to by virtue of belonging to a social group) and health has been the subject of discussion at least since the work of Émile Durkheim (1897) who emphasized the social roots of individual health problems, such as stress and its extreme form, reflected in suicidal tendencies. The discipline of medical sociology studies the social determinants of health, partly by focusing on those components of the social capital of individuals that directly influence their health (Cockerham 2017). 

Using a comparative approach and focusing more on senescence than chronological ageing, Sueur et al. (2021) provide ample evidence that social capital has a positive relationship with fitness in many animal species, while stressing the plastic nature of senescence and therefore, pointing at the possibility that one way of improving health over an individual’s life span could be to improve its social capital. This dynamic view of the relationship between social capital and health, as a determinant of healthy ageing as a process, is one of the main conceptual contributions of this work. Another important contribution is the multi-level framework used by the authors in their review. Taking into account the cellular, endocrine, behavioral, individual and social network levels into the same conceptual scheme is a welcome attempt in view of the traditional reductionistic approaches taken in biomedicine. Another strength of the paper is the use of clearly explained boxes to tackle complicated and long-debated terms like social capital or display a full glossary with all the important terms introduced in the paper.

The authors point at the potential mechanisms by which social capital could affect senescence. Here, it is worth pointing out the contemporary context in which one mechanism identified by the authors, takes place in human communities. Since the work of Seyle (1970) it is well known that stress hormones produce a kind of premature ageing process due to a continued stress response. Clearly, socially determined stressful conditions such as racism in modern society, can lead to the activation of coping mechanisms that may be related to premature ageing (e.g. Geronimus et al. 2006). 

A word of caution is particularly relevant: social capital can also have negative effects on health, the most obvious in the context of a pandemic like COVID-19’s being a higher risk of contagion from social exposure. It remains to be seen whether the way in which the human population has adapted as individuals and societies to this risk has necessarily implied a sharp, and probably costly, decrease in social capital.

Overall, this paper should be a good introduction to the intricate relationships between healthy ageing and social capital, hopefully inspiring further research using both animals and humans to understand the social component of ageing.

References

Cockerham WC (2017) Medical Sociology. Routledge, New York. https://doi.org/10.4324/9781315618692

Durkheim É (1951) Suicide: a study in sociology. Free Press, Glencoe, Illinois.

Geronimus AT, Hicken M, Keene D, Bound J (2006) “Weathering” and Age Patterns of Allostatic Load Scores Among Blacks and Whites in the United States. American Journal of Public Health, 96, 826–833. https://doi.org/10.2105/AJPH.2004.060749

Selye H (1970) Stress and Aging. Journal of the American Geriatrics Society, 18, 669–680. https://doi.org/10.1111/j.1532-5415.1970.tb02813.x

Sueur C, Quque M, Naud A, Bergouignan A, Criscuolo F (2021) Social capital: an independent dimension of healthy ageing. HAL, hal-03299528,  ver. 3 peer-reviewed and recommended by Peer Community in Network Science. https://hal.archives-ouvertes.fr/hal-03299528